Cluster: HRGMv2_4563_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4563
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4563_11 | HRGMv2_4563_11_30 | 29204 | 31093 | + | 3.A.1.121.4 |
| CAZyme | HRGMv2_4563_11 | HRGMv2_4563_11_31 | 31213 | 31983 | + | GT111 |
| CAZyme | HRGMv2_4563_11 | HRGMv2_4563_11_32 | 31976 | 32878 | + | GT2 |
| pfam | HRGMv2_4563_11 | HRGMv2_4563_11_33 | 32875 | 34593 | + | Hydrolase | Hydrolase_like |
| CAZyme | HRGMv2_4563_11 | HRGMv2_4563_11_34 | 34616 | 35632 | + | GT2 |
Gene ID: HRGMv2_4563_11_30
Type: TC
Location: 29204 - 31093 (+)
Type: TC
Location: 29204 - 31093 (+)
Gene ID: HRGMv2_4563_11_31
Type: CAZyme
Location: 31213 - 31983 (+)
Type: CAZyme
Location: 31213 - 31983 (+)
Gene ID: HRGMv2_4563_11_32
Type: CAZyme
Location: 31976 - 32878 (+)
Type: CAZyme
Location: 31976 - 32878 (+)
Gene ID: HRGMv2_4563_11_33
Type: pfam
Location: 32875 - 34593 (+)
Type: pfam
Location: 32875 - 34593 (+)
Gene ID: HRGMv2_4563_11_34
Type: CAZyme
Location: 34616 - 35632 (+)
Type: CAZyme
Location: 34616 - 35632 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.