Cluster: HRGMv2_4563_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4563
- CGC Family ID: CGCFAM_00055
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4563_7 | HRGMv2_4563_7_36 | 42096 | 43160 | + | GT2 |
| pfam | HRGMv2_4563_7 | HRGMv2_4563_7_37 | 43164 | 44276 | + | ATPgrasp_TupA |
| CAZyme | HRGMv2_4563_7 | HRGMv2_4563_7_38 | 44277 | 45257 | + | GT2 |
| CAZyme | HRGMv2_4563_7 | HRGMv2_4563_7_39 | 45277 | 47283 | + | GT2 | GT2 |
| TC | HRGMv2_4563_7 | HRGMv2_4563_7_40 | 47298 | 48155 | + | 3.A.1.103.5 |
| TC | HRGMv2_4563_7 | HRGMv2_4563_7_41 | 48169 | 49443 | + | 3.A.1.103.5 |
Gene ID: HRGMv2_4563_7_36
Type: CAZyme
Location: 42096 - 43160 (+)
Type: CAZyme
Location: 42096 - 43160 (+)
Gene ID: HRGMv2_4563_7_37
Type: pfam
Location: 43164 - 44276 (+)
Type: pfam
Location: 43164 - 44276 (+)
Gene ID: HRGMv2_4563_7_38
Type: CAZyme
Location: 44277 - 45257 (+)
Type: CAZyme
Location: 44277 - 45257 (+)
Gene ID: HRGMv2_4563_7_39
Type: CAZyme
Location: 45277 - 47283 (+)
Type: CAZyme
Location: 45277 - 47283 (+)
Gene ID: HRGMv2_4563_7_40
Type: TC
Location: 47298 - 48155 (+)
Type: TC
Location: 47298 - 48155 (+)
Gene ID: HRGMv2_4563_7_41
Type: TC
Location: 48169 - 49443 (+)
Type: TC
Location: 48169 - 49443 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.