Cluster: HRGMv2_4558_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4558
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4558_13 | HRGMv2_4558_13_19 | 20303 | 22843 | - | GH2 |
| pfam | HRGMv2_4558_13 | HRGMv2_4558_13_20 | 22848 | 23393 | - | Hydrolase | HAD | HAD_2 |
| NULL(UNKNOWN) | HRGMv2_4558_13 | HRGMv2_4558_13_21 | 23563 | 23958 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4558_13 | HRGMv2_4558_13_22 | 24192 | 25076 | + | 3.A.1.132.8 |
| NULL(UNKNOWN) | HRGMv2_4558_13 | HRGMv2_4558_13_23 | 25078 | 25947 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_4558_13 | HRGMv2_4558_13_24 | 26590 | 26949 | + | Sigma70_r4_2 |
| TC | HRGMv2_4558_13 | HRGMv2_4558_13_25 | 26968 | 28344 | + | 3.A.5.1.1 |
Gene ID: HRGMv2_4558_13_19
Type: CAZyme
Location: 20303 - 22843 (-)
Type: CAZyme
Location: 20303 - 22843 (-)
Gene ID: HRGMv2_4558_13_20
Type: pfam
Location: 22848 - 23393 (-)
Type: pfam
Location: 22848 - 23393 (-)
Gene ID: HRGMv2_4558_13_21
Type:
Location: 23563 - 23958 (+)
Type:
Location: 23563 - 23958 (+)
Gene ID: HRGMv2_4558_13_22
Type: TC
Location: 24192 - 25076 (+)
Type: TC
Location: 24192 - 25076 (+)
Gene ID: HRGMv2_4558_13_23
Type:
Location: 25078 - 25947 (+)
Type:
Location: 25078 - 25947 (+)
Gene ID: HRGMv2_4558_13_24
Type: STP
Location: 26590 - 26949 (+)
Type: STP
Location: 26590 - 26949 (+)
Gene ID: HRGMv2_4558_13_25
Type: TC
Location: 26968 - 28344 (+)
Type: TC
Location: 26968 - 28344 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
CAG-115
Species
CAG-115 sp934481445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.