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Cluster: HRGMv2_4558_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4558_12 HRGMv2_4558_12_22 20907 22310 - 2.A.66.1.33
CAZyme HRGMv2_4558_12 HRGMv2_4558_12_23 22312 25020 - GH59
TF HRGMv2_4558_12 HRGMv2_4558_12_24 25118 25939 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_4558_12 HRGMv2_4558_12_25 26052 27962 + GH127
STP HRGMv2_4558_12 HRGMv2_4558_12_26 27986 29872 + GGDEF | Peripla_BP_3
CAZyme HRGMv2_4558_12 HRGMv2_4558_12_27 29913 32003 + GH3
CAZyme HRGMv2_4558_12 HRGMv2_4558_12_28 32008 35496 + GH2
Gene ID: HRGMv2_4558_12_22
Type: TC
Location: 20907 - 22310 (-)
Gene ID: HRGMv2_4558_12_23
Type: CAZyme
Location: 22312 - 25020 (-)
Gene ID: HRGMv2_4558_12_24
Type: TF
Location: 25118 - 25939 (-)
Gene ID: HRGMv2_4558_12_25
Type: CAZyme
Location: 26052 - 27962 (+)
Gene ID: HRGMv2_4558_12_26
Type: STP
Location: 27986 - 29872 (+)
Gene ID: HRGMv2_4558_12_27
Type: CAZyme
Location: 29913 - 32003 (+)
Gene ID: HRGMv2_4558_12_28
Type: CAZyme
Location: 32008 - 35496 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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