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Cluster: HRGMv2_4558_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4558_62 HRGMv2_4558_62_1 219 1640 + GT5
pfam HRGMv2_4558_62 HRGMv2_4558_62_2 1746 3269 + FGGY_N | FGGY_C
TC HRGMv2_4558_62 HRGMv2_4558_62_3 3391 3978 + 3.A.11.1.1
TC HRGMv2_4558_62 HRGMv2_4558_62_4 3975 4343 + 3.A.11.1.1
pfam HRGMv2_4558_62 HRGMv2_4558_62_5 4583 6910 + Gly_radical | ATP-cone | NRDD
pfam HRGMv2_4558_62 HRGMv2_4558_62_6 6967 7470 + Radical_SAM | Fer4_12
TC HRGMv2_4558_62 HRGMv2_4558_62_7 7565 9139 + 3.A.1.5.18
Gene ID: HRGMv2_4558_62_1
Type: CAZyme
Location: 219 - 1640 (+)
Gene ID: HRGMv2_4558_62_2
Type: pfam
Location: 1746 - 3269 (+)
Gene ID: HRGMv2_4558_62_3
Type: TC
Location: 3391 - 3978 (+)
Gene ID: HRGMv2_4558_62_4
Type: TC
Location: 3975 - 4343 (+)
Gene ID: HRGMv2_4558_62_5
Type: pfam
Location: 4583 - 6910 (+)
Gene ID: HRGMv2_4558_62_6
Type: pfam
Location: 6967 - 7470 (+)
Gene ID: HRGMv2_4558_62_7
Type: TC
Location: 7565 - 9139 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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