Cluster: HRGMv2_4558_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4558
- CGC Family ID: CGCFAM_07670
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4558_52 | HRGMv2_4558_52_2 | 1615 | 3915 | - | 3.A.5.2.2 |
| STP | HRGMv2_4558_52 | HRGMv2_4558_52_3 | 3981 | 4508 | - | NUDIX |
| CAZyme | HRGMv2_4558_52 | HRGMv2_4558_52_4 | 4509 | 5696 | - | GH130_1 |
| pfam | HRGMv2_4558_52 | HRGMv2_4558_52_5 | 5827 | 6477 | + | Hydrolase | Hydrolase_like | HAD_2 |
| TC | HRGMv2_4558_52 | HRGMv2_4558_52_6 | 6643 | 7242 | + | 2.A.115.2.14 |
| TC | HRGMv2_4558_52 | HRGMv2_4558_52_7 | 7548 | 9077 | - | 2.A.21.2.3 |
Gene ID: HRGMv2_4558_52_2
Type: TC
Location: 1615 - 3915 (-)
Type: TC
Location: 1615 - 3915 (-)
Gene ID: HRGMv2_4558_52_3
Type: STP
Location: 3981 - 4508 (-)
Type: STP
Location: 3981 - 4508 (-)
Gene ID: HRGMv2_4558_52_4
Type: CAZyme
Location: 4509 - 5696 (-)
Type: CAZyme
Location: 4509 - 5696 (-)
Gene ID: HRGMv2_4558_52_5
Type: pfam
Location: 5827 - 6477 (+)
Type: pfam
Location: 5827 - 6477 (+)
Gene ID: HRGMv2_4558_52_6
Type: TC
Location: 6643 - 7242 (+)
Type: TC
Location: 6643 - 7242 (+)
Gene ID: HRGMv2_4558_52_7
Type: TC
Location: 7548 - 9077 (-)
Type: TC
Location: 7548 - 9077 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
CAG-115
Species
CAG-115 sp934481445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.