Cluster: HRGMv2_4558_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4558
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4558_34 | HRGMv2_4558_34_15 | 18054 | 18689 | - | CE4 |
| CAZyme | HRGMv2_4558_34 | HRGMv2_4558_34_16 | 18693 | 19562 | - | CE4 |
| pfam | HRGMv2_4558_34 | HRGMv2_4558_34_17 | 19620 | 22043 | - | tRNA-synt_1 | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2 |
| pfam | HRGMv2_4558_34 | HRGMv2_4558_34_18 | 22123 | 22851 | - | TMEM164 |
| TC | HRGMv2_4558_34 | HRGMv2_4558_34_19 | 23020 | 24351 | + | 2.A.22.5.3 |
Gene ID: HRGMv2_4558_34_15
Type: CAZyme
Location: 18054 - 18689 (-)
Type: CAZyme
Location: 18054 - 18689 (-)
Gene ID: HRGMv2_4558_34_16
Type: CAZyme
Location: 18693 - 19562 (-)
Type: CAZyme
Location: 18693 - 19562 (-)
Gene ID: HRGMv2_4558_34_17
Type: pfam
Location: 19620 - 22043 (-)
Type: pfam
Location: 19620 - 22043 (-)
Gene ID: HRGMv2_4558_34_18
Type: pfam
Location: 22123 - 22851 (-)
Type: pfam
Location: 22123 - 22851 (-)
Gene ID: HRGMv2_4558_34_19
Type: TC
Location: 23020 - 24351 (+)
Type: TC
Location: 23020 - 24351 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
CAG-115
Species
CAG-115 sp934481445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.