Cluster: HRGMv2_4558_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4558
- CGC Family ID: CGCFAM_00794
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4558_33 | HRGMv2_4558_33_11 | 14069 | 14635 | - | 2.A.51.1.6 |
| TC | HRGMv2_4558_33 | HRGMv2_4558_33_12 | 14632 | 15177 | - | 2.A.51.1.6 |
| CAZyme | HRGMv2_4558_33 | HRGMv2_4558_33_13 | 15308 | 18307 | - | GH2 |
| TF | HRGMv2_4558_33 | HRGMv2_4558_33_14 | 18419 | 19225 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4558_33 | HRGMv2_4558_33_15 | 19551 | 20231 | + | 9.B.143.2.3 |
Gene ID: HRGMv2_4558_33_11
Type: TC
Location: 14069 - 14635 (-)
Type: TC
Location: 14069 - 14635 (-)
Gene ID: HRGMv2_4558_33_12
Type: TC
Location: 14632 - 15177 (-)
Type: TC
Location: 14632 - 15177 (-)
Gene ID: HRGMv2_4558_33_13
Type: CAZyme
Location: 15308 - 18307 (-)
Type: CAZyme
Location: 15308 - 18307 (-)
Gene ID: HRGMv2_4558_33_14
Type: TF
Location: 18419 - 19225 (+)
Type: TF
Location: 18419 - 19225 (+)
Gene ID: HRGMv2_4558_33_15
Type: TC
Location: 19551 - 20231 (+)
Type: TC
Location: 19551 - 20231 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
CAG-115
Species
CAG-115 sp934481445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.