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Cluster: HRGMv2_4558_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4558_4 HRGMv2_4558_4_4 3219 4088 + 3.D.1.8.1
pfam HRGMv2_4558_4 HRGMv2_4558_4_5 4119 5147 + Pro_isomerase | Pro_isomerase
STP HRGMv2_4558_4 HRGMv2_4558_4_6 5191 5808 - Nitroreductase
CAZyme HRGMv2_4558_4 HRGMv2_4558_4_7 5962 8253 + GH95
pfam HRGMv2_4558_4 HRGMv2_4558_4_8 8416 9894 + Fucose_iso_C
TF HRGMv2_4558_4 HRGMv2_4558_4_9 9956 10741 + HTH_AraC
CAZyme HRGMv2_4558_4 HRGMv2_4558_4_10 10835 12046 + GH5_4
TC HRGMv2_4558_4 HRGMv2_4558_4_11 12257 13276 + 9.B.157.1.2
Gene ID: HRGMv2_4558_4_4
Type: TC
Location: 3219 - 4088 (+)
Gene ID: HRGMv2_4558_4_5
Type: pfam
Location: 4119 - 5147 (+)
Gene ID: HRGMv2_4558_4_6
Type: STP
Location: 5191 - 5808 (-)
Gene ID: HRGMv2_4558_4_7
Type: CAZyme
Location: 5962 - 8253 (+)
Gene ID: HRGMv2_4558_4_8
Type: pfam
Location: 8416 - 9894 (+)
Gene ID: HRGMv2_4558_4_9
Type: TF
Location: 9956 - 10741 (+)
Gene ID: HRGMv2_4558_4_10
Type: CAZyme
Location: 10835 - 12046 (+)
Gene ID: HRGMv2_4558_4_11
Type: TC
Location: 12257 - 13276 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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