Cluster: HRGMv2_4553_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4553
- CGC Family ID: CGCFAM_03522
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4553_4 | HRGMv2_4553_4_61 | 67774 | 71238 | + | CBM22 | CBM91 | CE1 | GH43_10 |
| CAZyme | HRGMv2_4553_4 | HRGMv2_4553_4_62 | 71510 | 74362 | + | CBM6 | GH141 |
| TC | HRGMv2_4553_4 | HRGMv2_4553_4_63 | 74541 | 75653 | + | 2.A.45.2.6 |
| peptidase | HRGMv2_4553_4 | HRGMv2_4553_4_64 | 75862 | 77910 | + | M13.UPW |
| pfam | HRGMv2_4553_4 | HRGMv2_4553_4_65 | 77914 | 80370 | + | FtsX | FtsX | MacB_PCD |
| TC | HRGMv2_4553_4 | HRGMv2_4553_4_66 | 80384 | 81109 | + | 3.A.1.134.3 |
Gene ID: HRGMv2_4553_4_61
Type: CAZyme
Location: 67774 - 71238 (+)
Type: CAZyme
Location: 67774 - 71238 (+)
Gene ID: HRGMv2_4553_4_62
Type: CAZyme
Location: 71510 - 74362 (+)
Type: CAZyme
Location: 71510 - 74362 (+)
Gene ID: HRGMv2_4553_4_63
Type: TC
Location: 74541 - 75653 (+)
Type: TC
Location: 74541 - 75653 (+)
Gene ID: HRGMv2_4553_4_64
Type: peptidase
Location: 75862 - 77910 (+)
Type: peptidase
Location: 75862 - 77910 (+)
Gene ID: HRGMv2_4553_4_65
Type: pfam
Location: 77914 - 80370 (+)
Type: pfam
Location: 77914 - 80370 (+)
Gene ID: HRGMv2_4553_4_66
Type: TC
Location: 80384 - 81109 (+)
Type: TC
Location: 80384 - 81109 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.