Cluster: HRGMv2_4553_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4553
- CGC Family ID: CGCFAM_00003
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4553_3 | HRGMv2_4553_3_77 | 90720 | 91871 | + | GT4 |
| CAZyme | HRGMv2_4553_3 | HRGMv2_4553_3_78 | 91864 | 92985 | + | GT4 |
| pfam | HRGMv2_4553_3 | HRGMv2_4553_3_79 | 93006 | 93974 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd |
| NULL(UNKNOWN) | HRGMv2_4553_3 | HRGMv2_4553_3_80 | 94007 | 94342 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4553_3 | HRGMv2_4553_3_81 | 94584 | 95243 | + | 3.A.2.1.2 |
Gene ID: HRGMv2_4553_3_77
Type: CAZyme
Location: 90720 - 91871 (+)
Type: CAZyme
Location: 90720 - 91871 (+)
Gene ID: HRGMv2_4553_3_78
Type: CAZyme
Location: 91864 - 92985 (+)
Type: CAZyme
Location: 91864 - 92985 (+)
Gene ID: HRGMv2_4553_3_79
Type: pfam
Location: 93006 - 93974 (+)
Type: pfam
Location: 93006 - 93974 (+)
Gene ID: HRGMv2_4553_3_80
Type:
Location: 94007 - 94342 (+)
Type:
Location: 94007 - 94342 (+)
Gene ID: HRGMv2_4553_3_81
Type: TC
Location: 94584 - 95243 (+)
Type: TC
Location: 94584 - 95243 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.