Cluster: HRGMv2_4553_CGC5
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4553
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4553_3 | HRGMv2_4553_3_43 | 54338 | 55255 | - | 9.B.102.7.10 |
| CAZyme | HRGMv2_4553_3 | HRGMv2_4553_3_44 | 55252 | 56229 | - | GT4 |
| CAZyme | HRGMv2_4553_3 | HRGMv2_4553_3_45 | 56213 | 57187 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_4553_3 | HRGMv2_4553_3_46 | 57206 | 59674 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4553_3 | HRGMv2_4553_3_47 | 59684 | 60868 | - | GT4 |
| CAZyme | HRGMv2_4553_3 | HRGMv2_4553_3_48 | 60865 | 62070 | - | GT4 |
| CAZyme | HRGMv2_4553_3 | HRGMv2_4553_3_49 | 62081 | 63163 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_4553_3 | HRGMv2_4553_3_50 | 63163 | 63618 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4553_3 | HRGMv2_4553_3_51 | 63622 | 64626 | - | MetW | Methyltransf_11 | Methyltransf_23 | Methyltransf_25 |
| TC | HRGMv2_4553_3 | HRGMv2_4553_3_52 | 64631 | 65857 | - | 3.A.1.103.4 |
| TC | HRGMv2_4553_3 | HRGMv2_4553_3_53 | 65857 | 66633 | - | 3.A.1.103.4 |
Gene ID: HRGMv2_4553_3_43
Type: TC
Location: 54338 - 55255 (-)
Type: TC
Location: 54338 - 55255 (-)
Gene ID: HRGMv2_4553_3_44
Type: CAZyme
Location: 55252 - 56229 (-)
Type: CAZyme
Location: 55252 - 56229 (-)
Gene ID: HRGMv2_4553_3_45
Type: CAZyme
Location: 56213 - 57187 (-)
Type: CAZyme
Location: 56213 - 57187 (-)
Gene ID: HRGMv2_4553_3_46
Type:
Location: 57206 - 59674 (-)
Type:
Location: 57206 - 59674 (-)
Gene ID: HRGMv2_4553_3_47
Type: CAZyme
Location: 59684 - 60868 (-)
Type: CAZyme
Location: 59684 - 60868 (-)
Gene ID: HRGMv2_4553_3_48
Type: CAZyme
Location: 60865 - 62070 (-)
Type: CAZyme
Location: 60865 - 62070 (-)
Gene ID: HRGMv2_4553_3_49
Type: CAZyme
Location: 62081 - 63163 (-)
Type: CAZyme
Location: 62081 - 63163 (-)
Gene ID: HRGMv2_4553_3_50
Type:
Location: 63163 - 63618 (-)
Type:
Location: 63163 - 63618 (-)
Gene ID: HRGMv2_4553_3_51
Type: pfam
Location: 63622 - 64626 (-)
Type: pfam
Location: 63622 - 64626 (-)
Gene ID: HRGMv2_4553_3_52
Type: TC
Location: 64631 - 65857 (-)
Type: TC
Location: 64631 - 65857 (-)
Gene ID: HRGMv2_4553_3_53
Type: TC
Location: 65857 - 66633 (-)
Type: TC
Location: 65857 - 66633 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.