Cluster: HRGMv2_4553_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4553
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4553_3 | HRGMv2_4553_3_11 | 12278 | 14170 | - | 3.A.1.135.5 |
| TC | HRGMv2_4553_3 | HRGMv2_4553_3_12 | 14170 | 15897 | - | 3.A.1.135.5 |
| peptidase | HRGMv2_4553_3 | HRGMv2_4553_3_13 | 16032 | 17027 | + | G05.UPW |
| peptidase | HRGMv2_4553_3 | HRGMv2_4553_3_14 | 17081 | 18067 | - | G05.UPW |
| CAZyme | HRGMv2_4553_3 | HRGMv2_4553_3_15 | 18352 | 20661 | - | GH31_3 |
| CAZyme | HRGMv2_4553_3 | HRGMv2_4553_3_16 | 21173 | 25072 | + | CBM22 | GH10 | GH43_16 |
Gene ID: HRGMv2_4553_3_11
Type: TC
Location: 12278 - 14170 (-)
Type: TC
Location: 12278 - 14170 (-)
Gene ID: HRGMv2_4553_3_12
Type: TC
Location: 14170 - 15897 (-)
Type: TC
Location: 14170 - 15897 (-)
Gene ID: HRGMv2_4553_3_13
Type: peptidase
Location: 16032 - 17027 (+)
Type: peptidase
Location: 16032 - 17027 (+)
Gene ID: HRGMv2_4553_3_14
Type: peptidase
Location: 17081 - 18067 (-)
Type: peptidase
Location: 17081 - 18067 (-)
Gene ID: HRGMv2_4553_3_15
Type: CAZyme
Location: 18352 - 20661 (-)
Type: CAZyme
Location: 18352 - 20661 (-)
Gene ID: HRGMv2_4553_3_16
Type: CAZyme
Location: 21173 - 25072 (+)
Type: CAZyme
Location: 21173 - 25072 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.