Cluster: HRGMv2_4553_CGC26
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4553
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4553_50 | HRGMv2_4553_50_19 | 15670 | 16335 | + | 3.D.1.8.1 |
| pfam | HRGMv2_4553_50 | HRGMv2_4553_50_20 | 16332 | 17471 | + | Orn_DAP_Arg_deC |
| pfam | HRGMv2_4553_50 | HRGMv2_4553_50_21 | 17471 | 18046 | + | His_Phos_1 |
| CAZyme | HRGMv2_4553_50 | HRGMv2_4553_50_22 | 18412 | 21849 | + | CE8 | PL1 |
Gene ID: HRGMv2_4553_50_19
Type: TC
Location: 15670 - 16335 (+)
Type: TC
Location: 15670 - 16335 (+)
Gene ID: HRGMv2_4553_50_20
Type: pfam
Location: 16332 - 17471 (+)
Type: pfam
Location: 16332 - 17471 (+)
Gene ID: HRGMv2_4553_50_21
Type: pfam
Location: 17471 - 18046 (+)
Type: pfam
Location: 17471 - 18046 (+)
Gene ID: HRGMv2_4553_50_22
Type: CAZyme
Location: 18412 - 21849 (+)
Type: CAZyme
Location: 18412 - 21849 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.