Cluster: HRGMv2_4553_CGC23
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4553
- CGC Family ID: CGCFAM_07872
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4553_46 | HRGMv2_4553_46_4 | 3389 | 7081 | + | CBM4 | GH9 |
| pfam | HRGMv2_4553_46 | HRGMv2_4553_46_5 | 7417 | 8337 | - | Dockerin_1 |
| TC | HRGMv2_4553_46 | HRGMv2_4553_46_6 | 8450 | 10003 | - | 3.A.1.121.4 |
Gene ID: HRGMv2_4553_46_4
Type: CAZyme
Location: 3389 - 7081 (+)
Type: CAZyme
Location: 3389 - 7081 (+)
Gene ID: HRGMv2_4553_46_5
Type: pfam
Location: 7417 - 8337 (-)
Type: pfam
Location: 7417 - 8337 (-)
Gene ID: HRGMv2_4553_46_6
Type: TC
Location: 8450 - 10003 (-)
Type: TC
Location: 8450 - 10003 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.