Cluster: HRGMv2_4553_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4553
- CGC Family ID: CGCFAM_05413
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4553_41 | HRGMv2_4553_41_1 | 1 | 807 | + | GH16_21 |
| TF | HRGMv2_4553_41 | HRGMv2_4553_41_2 | 968 | 1345 | + | GntR |
| TC | HRGMv2_4553_41 | HRGMv2_4553_41_3 | 1342 | 2271 | + | 3.A.1.132.6 |
| NULL(UNKNOWN) | HRGMv2_4553_41 | HRGMv2_4553_41_4 | 2243 | 4579 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4553_41 | HRGMv2_4553_41_5 | 4632 | 7238 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4553_41 | HRGMv2_4553_41_6 | 7403 | 11089 | - | CBM22 | CE1 | GH10 | GH11 |
Gene ID: HRGMv2_4553_41_1
Type: CAZyme
Location: 1 - 807 (+)
Type: CAZyme
Location: 1 - 807 (+)
Gene ID: HRGMv2_4553_41_2
Type: TF
Location: 968 - 1345 (+)
Type: TF
Location: 968 - 1345 (+)
Gene ID: HRGMv2_4553_41_3
Type: TC
Location: 1342 - 2271 (+)
Type: TC
Location: 1342 - 2271 (+)
Gene ID: HRGMv2_4553_41_4
Type:
Location: 2243 - 4579 (+)
Type:
Location: 2243 - 4579 (+)
Gene ID: HRGMv2_4553_41_5
Type:
Location: 4632 - 7238 (-)
Type:
Location: 4632 - 7238 (-)
Gene ID: HRGMv2_4553_41_6
Type: CAZyme
Location: 7403 - 11089 (-)
Type: CAZyme
Location: 7403 - 11089 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.