Cluster: HRGMv2_4553_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4553
- CGC Family ID: CGCFAM_04665
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4553_1 | HRGMv2_4553_1_66 | 71857 | 74496 | + | 3.A.3.2.21 |
| NULL(UNKNOWN) | HRGMv2_4553_1 | HRGMv2_4553_1_67 | 74562 | 76025 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4553_1 | HRGMv2_4553_1_68 | 76018 | 77562 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4553_1 | HRGMv2_4553_1_69 | 77945 | 80266 | + | GH95 |
| CAZyme | HRGMv2_4553_1 | HRGMv2_4553_1_70 | 80284 | 81966 | + | CBM35 | GH26 |
Gene ID: HRGMv2_4553_1_66
Type: TC
Location: 71857 - 74496 (+)
Type: TC
Location: 71857 - 74496 (+)
Gene ID: HRGMv2_4553_1_67
Type:
Location: 74562 - 76025 (-)
Type:
Location: 74562 - 76025 (-)
Gene ID: HRGMv2_4553_1_68
Type:
Location: 76018 - 77562 (-)
Type:
Location: 76018 - 77562 (-)
Gene ID: HRGMv2_4553_1_69
Type: CAZyme
Location: 77945 - 80266 (+)
Type: CAZyme
Location: 77945 - 80266 (+)
Gene ID: HRGMv2_4553_1_70
Type: CAZyme
Location: 80284 - 81966 (+)
Type: CAZyme
Location: 80284 - 81966 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.