Cluster: HRGMv2_4553_CGC17
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4553
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4553_14 | HRGMv2_4553_14_31 | 33756 | 35549 | + | 3.A.1.120.6 |
| pfam | HRGMv2_4553_14 | HRGMv2_4553_14_32 | 35592 | 36146 | - | HD | YfbR-like | HD_3 |
| CAZyme | HRGMv2_4553_14 | HRGMv2_4553_14_33 | 36551 | 38770 | + | CE3 | GH11 |
Gene ID: HRGMv2_4553_14_31
Type: TC
Location: 33756 - 35549 (+)
Type: TC
Location: 33756 - 35549 (+)
Gene ID: HRGMv2_4553_14_32
Type: pfam
Location: 35592 - 36146 (-)
Type: pfam
Location: 35592 - 36146 (-)
Gene ID: HRGMv2_4553_14_33
Type: CAZyme
Location: 36551 - 38770 (+)
Type: CAZyme
Location: 36551 - 38770 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.