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Cluster: HRGMv2_4553_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4553_1 HRGMv2_4553_1_32 31093 33813 - 9.B.74.1.4
pfam HRGMv2_4553_1 HRGMv2_4553_1_33 33849 35954 - ACR_tran | MMPL | MMPL
STP HRGMv2_4553_1 HRGMv2_4553_1_34 36503 37117 + TetR_N
TC HRGMv2_4553_1 HRGMv2_4553_1_35 37436 38776 - 2.A.66.1.28
STP HRGMv2_4553_1 HRGMv2_4553_1_36 39024 40328 - EPSP_synthase
TC HRGMv2_4553_1 HRGMv2_4553_1_37 40437 41990 - 3.D.1.8.1
pfam HRGMv2_4553_1 HRGMv2_4553_1_38 42179 42985 - Pro_isomerase
NULL(UNKNOWN) HRGMv2_4553_1 HRGMv2_4553_1_39 43268 43468 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4553_1 HRGMv2_4553_1_40 43488 44462 - GT2
Gene ID: HRGMv2_4553_1_32
Type: TC
Location: 31093 - 33813 (-)
Gene ID: HRGMv2_4553_1_33
Type: pfam
Location: 33849 - 35954 (-)
Gene ID: HRGMv2_4553_1_34
Type: STP
Location: 36503 - 37117 (+)
Gene ID: HRGMv2_4553_1_35
Type: TC
Location: 37436 - 38776 (-)
Gene ID: HRGMv2_4553_1_36
Type: STP
Location: 39024 - 40328 (-)
Gene ID: HRGMv2_4553_1_37
Type: TC
Location: 40437 - 41990 (-)
Gene ID: HRGMv2_4553_1_38
Type: pfam
Location: 42179 - 42985 (-)
Gene ID: HRGMv2_4553_1_39
Type:
Location: 43268 - 43468 (-)
Gene ID: HRGMv2_4553_1_40
Type: CAZyme
Location: 43488 - 44462 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Ruminococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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