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Cluster: HRGMv2_4550_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4550_7 HRGMv2_4550_7_39 41187 43130 + GH78
TF HRGMv2_4550_7 HRGMv2_4550_7_40 43328 43819 + 0044258
TC HRGMv2_4550_7 HRGMv2_4550_7_41 43809 44531 + 2.A.78.1.1
TC HRGMv2_4550_7 HRGMv2_4550_7_42 44528 44854 + 2.A.78.1.1
pfam HRGMv2_4550_7 HRGMv2_4550_7_43 44889 45797 + CAP | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3
TC HRGMv2_4550_7 HRGMv2_4550_7_44 45973 47355 + 2.A.66.1.32
Gene ID: HRGMv2_4550_7_39
Type: CAZyme
Location: 41187 - 43130 (+)
Gene ID: HRGMv2_4550_7_40
Type: TF
Location: 43328 - 43819 (+)
Gene ID: HRGMv2_4550_7_41
Type: TC
Location: 43809 - 44531 (+)
Gene ID: HRGMv2_4550_7_42
Type: TC
Location: 44528 - 44854 (+)
Gene ID: HRGMv2_4550_7_43
Type: pfam
Location: 44889 - 45797 (+)
Gene ID: HRGMv2_4550_7_44
Type: TC
Location: 45973 - 47355 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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