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Cluster: HRGMv2_4550_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4550_6 HRGMv2_4550_6_39 33044 34888 - GH127
TF HRGMv2_4550_6 HRGMv2_4550_6_40 35025 35846 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4550_6 HRGMv2_4550_6_41 36014 37876 + GH20
CAZyme HRGMv2_4550_6 HRGMv2_4550_6_42 38055 40292 + CBM67 | GH78
CAZyme HRGMv2_4550_6 HRGMv2_4550_6_43 40470 43076 - CBM67 | GH78
TC HRGMv2_4550_6 HRGMv2_4550_6_44 43187 44920 - 3.A.1.135.5
TC HRGMv2_4550_6 HRGMv2_4550_6_45 44978 46435 - 2.A.66.1.13
TC HRGMv2_4550_6 HRGMv2_4550_6_46 46586 48130 - 2.A.21.2.5
pfam HRGMv2_4550_6 HRGMv2_4550_6_47 48623 49219 + DUF4358
TC HRGMv2_4550_6 HRGMv2_4550_6_48 49415 50794 + 2.A.50.2.1
pfam HRGMv2_4550_6 HRGMv2_4550_6_49 50816 51946 + DHHW | ALGX
TC HRGMv2_4550_6 HRGMv2_4550_6_50 52144 54756 + 3.A.9.1.2
Gene ID: HRGMv2_4550_6_39
Type: CAZyme
Location: 33044 - 34888 (-)
Gene ID: HRGMv2_4550_6_40
Type: TF
Location: 35025 - 35846 (+)
Gene ID: HRGMv2_4550_6_41
Type: CAZyme
Location: 36014 - 37876 (+)
Gene ID: HRGMv2_4550_6_42
Type: CAZyme
Location: 38055 - 40292 (+)
Gene ID: HRGMv2_4550_6_43
Type: CAZyme
Location: 40470 - 43076 (-)
Gene ID: HRGMv2_4550_6_44
Type: TC
Location: 43187 - 44920 (-)
Gene ID: HRGMv2_4550_6_45
Type: TC
Location: 44978 - 46435 (-)
Gene ID: HRGMv2_4550_6_46
Type: TC
Location: 46586 - 48130 (-)
Gene ID: HRGMv2_4550_6_47
Type: pfam
Location: 48623 - 49219 (+)
Gene ID: HRGMv2_4550_6_48
Type: TC
Location: 49415 - 50794 (+)
Gene ID: HRGMv2_4550_6_49
Type: pfam
Location: 50816 - 51946 (+)
Gene ID: HRGMv2_4550_6_50
Type: TC
Location: 52144 - 54756 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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