Cluster: HRGMv2_4550_CGC37
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4550
- CGC Family ID: CGCFAM_01314
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4550_57 | HRGMv2_4550_57_5 | 6142 | 7053 | - | 3.A.1.1.29 |
| TC | HRGMv2_4550_57 | HRGMv2_4550_57_6 | 7066 | 8037 | - | 3.A.1.1.10 |
| TF | HRGMv2_4550_57 | HRGMv2_4550_57_7 | 8283 | 10568 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4550_57 | HRGMv2_4550_57_8 | 10965 | 11972 | - | GH18 |
| TF | HRGMv2_4550_57 | HRGMv2_4550_57_9 | 12282 | 13298 | + | 0036955 |
| CAZyme | HRGMv2_4550_57 | HRGMv2_4550_57_10 | 13336 | 14001 | + | GH29 |
| CAZyme | HRGMv2_4550_57 | HRGMv2_4550_57_11 | 14042 | 15031 | + | GH130_2 |
Gene ID: HRGMv2_4550_57_5
Type: TC
Location: 6142 - 7053 (-)
Type: TC
Location: 6142 - 7053 (-)
Gene ID: HRGMv2_4550_57_6
Type: TC
Location: 7066 - 8037 (-)
Type: TC
Location: 7066 - 8037 (-)
Gene ID: HRGMv2_4550_57_7
Type: TF
Location: 8283 - 10568 (-)
Type: TF
Location: 8283 - 10568 (-)
Gene ID: HRGMv2_4550_57_8
Type: CAZyme
Location: 10965 - 11972 (-)
Type: CAZyme
Location: 10965 - 11972 (-)
Gene ID: HRGMv2_4550_57_9
Type: TF
Location: 12282 - 13298 (+)
Type: TF
Location: 12282 - 13298 (+)
Gene ID: HRGMv2_4550_57_10
Type: CAZyme
Location: 13336 - 14001 (+)
Type: CAZyme
Location: 13336 - 14001 (+)
Gene ID: HRGMv2_4550_57_11
Type: CAZyme
Location: 14042 - 15031 (+)
Type: CAZyme
Location: 14042 - 15031 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp934869045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.