Cluster: HRGMv2_4550_CGC35
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4550
- CGC Family ID: CGCFAM_09745
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4550_52 | HRGMv2_4550_52_11 | 10649 | 12523 | - | GH143 |
| CAZyme | HRGMv2_4550_52 | HRGMv2_4550_52_12 | 12526 | 13488 | - | CE7 |
| TF | HRGMv2_4550_52 | HRGMv2_4550_52_13 | 13502 | 15811 | - | HTH_AraC |
| pfam | HRGMv2_4550_52 | HRGMv2_4550_52_14 | 15931 | 16830 | - | DHDPS |
| TC | HRGMv2_4550_52 | HRGMv2_4550_52_15 | 16908 | 18539 | - | 3.A.1.1.10 |
| TC | HRGMv2_4550_52 | HRGMv2_4550_52_16 | 18588 | 19472 | - | 3.A.1.1.29 |
| TC | HRGMv2_4550_52 | HRGMv2_4550_52_17 | 19486 | 20127 | - | 3.A.1.1.10 |
Gene ID: HRGMv2_4550_52_11
Type: CAZyme
Location: 10649 - 12523 (-)
Type: CAZyme
Location: 10649 - 12523 (-)
Gene ID: HRGMv2_4550_52_12
Type: CAZyme
Location: 12526 - 13488 (-)
Type: CAZyme
Location: 12526 - 13488 (-)
Gene ID: HRGMv2_4550_52_13
Type: TF
Location: 13502 - 15811 (-)
Type: TF
Location: 13502 - 15811 (-)
Gene ID: HRGMv2_4550_52_14
Type: pfam
Location: 15931 - 16830 (-)
Type: pfam
Location: 15931 - 16830 (-)
Gene ID: HRGMv2_4550_52_15
Type: TC
Location: 16908 - 18539 (-)
Type: TC
Location: 16908 - 18539 (-)
Gene ID: HRGMv2_4550_52_16
Type: TC
Location: 18588 - 19472 (-)
Type: TC
Location: 18588 - 19472 (-)
Gene ID: HRGMv2_4550_52_17
Type: TC
Location: 19486 - 20127 (-)
Type: TC
Location: 19486 - 20127 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp934869045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.