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Cluster: HRGMv2_4550_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4550_50 HRGMv2_4550_50_2 620 1894 + 2.A.86.1.8
STP HRGMv2_4550_50 HRGMv2_4550_50_3 1897 2472 + Nitroreductase
CAZyme HRGMv2_4550_50 HRGMv2_4550_50_4 2670 3995 + GH39
TC HRGMv2_4550_50 HRGMv2_4550_50_5 4047 5033 - 3.A.1.5.20
TC HRGMv2_4550_50 HRGMv2_4550_50_6 5014 6183 - 3.A.1.5.20
TC HRGMv2_4550_50 HRGMv2_4550_50_7 6193 7236 - 3.A.1.5.20
TC HRGMv2_4550_50 HRGMv2_4550_50_8 7253 8230 - 3.A.1.5.20
STP HRGMv2_4550_50 HRGMv2_4550_50_9 8444 10507 - SBP_bac_5
pfam HRGMv2_4550_50 HRGMv2_4550_50_10 11425 12186 + AP_endonuc_2
CAZyme HRGMv2_4550_50 HRGMv2_4550_50_11 12206 13375 + GH177
Gene ID: HRGMv2_4550_50_2
Type: TC
Location: 620 - 1894 (+)
Gene ID: HRGMv2_4550_50_3
Type: STP
Location: 1897 - 2472 (+)
Gene ID: HRGMv2_4550_50_4
Type: CAZyme
Location: 2670 - 3995 (+)
Gene ID: HRGMv2_4550_50_5
Type: TC
Location: 4047 - 5033 (-)
Gene ID: HRGMv2_4550_50_6
Type: TC
Location: 5014 - 6183 (-)
Gene ID: HRGMv2_4550_50_7
Type: TC
Location: 6193 - 7236 (-)
Gene ID: HRGMv2_4550_50_8
Type: TC
Location: 7253 - 8230 (-)
Gene ID: HRGMv2_4550_50_9
Type: STP
Location: 8444 - 10507 (-)
Gene ID: HRGMv2_4550_50_10
Type: pfam
Location: 11425 - 12186 (+)
Gene ID: HRGMv2_4550_50_11
Type: CAZyme
Location: 12206 - 13375 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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