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Cluster: HRGMv2_4550_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4550_42 HRGMv2_4550_42_1 3 1166 + CE9
CAZyme HRGMv2_4550_42 HRGMv2_4550_42_2 1280 3127 + GH35
TF HRGMv2_4550_42 HRGMv2_4550_42_3 3182 4024 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_4550_42 HRGMv2_4550_42_4 4301 5617 + GH4
CAZyme HRGMv2_4550_42 HRGMv2_4550_42_5 5808 8141 + GH2
pfam HRGMv2_4550_42 HRGMv2_4550_42_6 8687 9181 - NAD_binding_7
TF HRGMv2_4550_42 HRGMv2_4550_42_7 9330 11567 - 0035607
TC HRGMv2_4550_42 HRGMv2_4550_42_8 11664 13328 - 3.A.1.1.10
TC HRGMv2_4550_42 HRGMv2_4550_42_9 13381 14286 - 3.A.1.1.29
TC HRGMv2_4550_42 HRGMv2_4550_42_10 14300 15244 - 3.A.1.1.10
pfam HRGMv2_4550_42 HRGMv2_4550_42_11 15702 16478 - Phosphodiest | Metalloenzyme
TC HRGMv2_4550_42 HRGMv2_4550_42_12 16482 18215 - 8.A.59.4.2
Gene ID: HRGMv2_4550_42_1
Type: CAZyme
Location: 3 - 1166 (+)
Gene ID: HRGMv2_4550_42_2
Type: CAZyme
Location: 1280 - 3127 (+)
Gene ID: HRGMv2_4550_42_3
Type: TF
Location: 3182 - 4024 (-)
Gene ID: HRGMv2_4550_42_4
Type: CAZyme
Location: 4301 - 5617 (+)
Gene ID: HRGMv2_4550_42_5
Type: CAZyme
Location: 5808 - 8141 (+)
Gene ID: HRGMv2_4550_42_6
Type: pfam
Location: 8687 - 9181 (-)
Gene ID: HRGMv2_4550_42_7
Type: TF
Location: 9330 - 11567 (-)
Gene ID: HRGMv2_4550_42_8
Type: TC
Location: 11664 - 13328 (-)
Gene ID: HRGMv2_4550_42_9
Type: TC
Location: 13381 - 14286 (-)
Gene ID: HRGMv2_4550_42_10
Type: TC
Location: 14300 - 15244 (-)
Gene ID: HRGMv2_4550_42_11
Type: pfam
Location: 15702 - 16478 (-)
Gene ID: HRGMv2_4550_42_12
Type: TC
Location: 16482 - 18215 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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