Cluster: HRGMv2_4550_CGC29
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4550
- CGC Family ID: CGCFAM_05697
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4550_41 | HRGMv2_4550_41_4 | 1168 | 2205 | + | GH179 |
| pfam | HRGMv2_4550_41 | HRGMv2_4550_41_5 | 2222 | 3094 | + | AP_endonuc_2 |
| CAZyme | HRGMv2_4550_41 | HRGMv2_4550_41_6 | 3099 | 4271 | + | CE9 |
| pfam | HRGMv2_4550_41 | HRGMv2_4550_41_7 | 4262 | 5230 | + | ROK |
| peptidase | HRGMv2_4550_41 | HRGMv2_4550_41_8 | 5246 | 6409 | + | M20.UPW |
| CAZyme | HRGMv2_4550_41 | HRGMv2_4550_41_9 | 6493 | 8175 | - | GH129 |
| TF | HRGMv2_4550_41 | HRGMv2_4550_41_10 | 8287 | 9132 | + | HTH_AraC | HTH_AraC |
| STP | HRGMv2_4550_41 | HRGMv2_4550_41_11 | 9195 | 10910 | - | SBP_bac_1 |
| TC | HRGMv2_4550_41 | HRGMv2_4550_41_12 | 10993 | 11886 | - | 3.A.1.1.29 |
| TC | HRGMv2_4550_41 | HRGMv2_4550_41_13 | 11899 | 12831 | - | 3.A.1.1.29 |
| TF | HRGMv2_4550_41 | HRGMv2_4550_41_14 | 13346 | 14089 | - | HTH_AraC | HTH_AraC |
| STP | HRGMv2_4550_41 | HRGMv2_4550_41_15 | 14122 | 15933 | - | HATPase_c | dCache_1 |
| TC | HRGMv2_4550_41 | HRGMv2_4550_41_16 | 16149 | 18518 | - | 3.A.3.23.2 |
Gene ID: HRGMv2_4550_41_4
Type: CAZyme
Location: 1168 - 2205 (+)
Type: CAZyme
Location: 1168 - 2205 (+)
Gene ID: HRGMv2_4550_41_5
Type: pfam
Location: 2222 - 3094 (+)
Type: pfam
Location: 2222 - 3094 (+)
Gene ID: HRGMv2_4550_41_6
Type: CAZyme
Location: 3099 - 4271 (+)
Type: CAZyme
Location: 3099 - 4271 (+)
Gene ID: HRGMv2_4550_41_7
Type: pfam
Location: 4262 - 5230 (+)
Type: pfam
Location: 4262 - 5230 (+)
Gene ID: HRGMv2_4550_41_8
Type: peptidase
Location: 5246 - 6409 (+)
Type: peptidase
Location: 5246 - 6409 (+)
Gene ID: HRGMv2_4550_41_9
Type: CAZyme
Location: 6493 - 8175 (-)
Type: CAZyme
Location: 6493 - 8175 (-)
Gene ID: HRGMv2_4550_41_10
Type: TF
Location: 8287 - 9132 (+)
Type: TF
Location: 8287 - 9132 (+)
Gene ID: HRGMv2_4550_41_11
Type: STP
Location: 9195 - 10910 (-)
Type: STP
Location: 9195 - 10910 (-)
Gene ID: HRGMv2_4550_41_12
Type: TC
Location: 10993 - 11886 (-)
Type: TC
Location: 10993 - 11886 (-)
Gene ID: HRGMv2_4550_41_13
Type: TC
Location: 11899 - 12831 (-)
Type: TC
Location: 11899 - 12831 (-)
Gene ID: HRGMv2_4550_41_14
Type: TF
Location: 13346 - 14089 (-)
Type: TF
Location: 13346 - 14089 (-)
Gene ID: HRGMv2_4550_41_15
Type: STP
Location: 14122 - 15933 (-)
Type: STP
Location: 14122 - 15933 (-)
Gene ID: HRGMv2_4550_41_16
Type: TC
Location: 16149 - 18518 (-)
Type: TC
Location: 16149 - 18518 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp934869045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.