Cluster: HRGMv2_4550_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4550
- CGC Family ID: CGCFAM_01644
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4550_35 | HRGMv2_4550_35_24 | 25440 | 26477 | - | GH179 |
| TF | HRGMv2_4550_35 | HRGMv2_4550_35_25 | 26720 | 27652 | + | HTH_AraC |
| TC | HRGMv2_4550_35 | HRGMv2_4550_35_26 | 27908 | 28834 | + | 3.A.1.1.10 |
| TC | HRGMv2_4550_35 | HRGMv2_4550_35_27 | 28873 | 29766 | + | 3.A.1.1.29 |
| TC | HRGMv2_4550_35 | HRGMv2_4550_35_28 | 29830 | 31452 | + | 3.A.1.1.9 |
| CAZyme | HRGMv2_4550_35 | HRGMv2_4550_35_29 | 31544 | 33985 | + | GH38 |
| CAZyme | HRGMv2_4550_35 | HRGMv2_4550_35_30 | 34023 | 37448 | + | PL17 |
Gene ID: HRGMv2_4550_35_24
Type: CAZyme
Location: 25440 - 26477 (-)
Type: CAZyme
Location: 25440 - 26477 (-)
Gene ID: HRGMv2_4550_35_25
Type: TF
Location: 26720 - 27652 (+)
Type: TF
Location: 26720 - 27652 (+)
Gene ID: HRGMv2_4550_35_26
Type: TC
Location: 27908 - 28834 (+)
Type: TC
Location: 27908 - 28834 (+)
Gene ID: HRGMv2_4550_35_27
Type: TC
Location: 28873 - 29766 (+)
Type: TC
Location: 28873 - 29766 (+)
Gene ID: HRGMv2_4550_35_28
Type: TC
Location: 29830 - 31452 (+)
Type: TC
Location: 29830 - 31452 (+)
Gene ID: HRGMv2_4550_35_29
Type: CAZyme
Location: 31544 - 33985 (+)
Type: CAZyme
Location: 31544 - 33985 (+)
Gene ID: HRGMv2_4550_35_30
Type: CAZyme
Location: 34023 - 37448 (+)
Type: CAZyme
Location: 34023 - 37448 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp934869045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.