Cluster: HRGMv2_4550_CGC27
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4550
- CGC Family ID: CGCFAM_00285
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4550_35 | HRGMv2_4550_35_16 | 14315 | 15643 | + | GH13 |
| TF | HRGMv2_4550_35 | HRGMv2_4550_35_17 | 15793 | 18183 | - | HTH_AraC |
| TC | HRGMv2_4550_35 | HRGMv2_4550_35_18 | 18414 | 19388 | + | 3.A.1.1.10 |
| TC | HRGMv2_4550_35 | HRGMv2_4550_35_19 | 19402 | 20322 | + | 3.A.1.1.29 |
| TC | HRGMv2_4550_35 | HRGMv2_4550_35_20 | 20369 | 22039 | + | 3.A.1.1.10 |
Gene ID: HRGMv2_4550_35_16
Type: CAZyme
Location: 14315 - 15643 (+)
Type: CAZyme
Location: 14315 - 15643 (+)
Gene ID: HRGMv2_4550_35_17
Type: TF
Location: 15793 - 18183 (-)
Type: TF
Location: 15793 - 18183 (-)
Gene ID: HRGMv2_4550_35_18
Type: TC
Location: 18414 - 19388 (+)
Type: TC
Location: 18414 - 19388 (+)
Gene ID: HRGMv2_4550_35_19
Type: TC
Location: 19402 - 20322 (+)
Type: TC
Location: 19402 - 20322 (+)
Gene ID: HRGMv2_4550_35_20
Type: TC
Location: 20369 - 22039 (+)
Type: TC
Location: 20369 - 22039 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp934869045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.