Cluster: HRGMv2_4550_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4550
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4550_28 | HRGMv2_4550_28_15 | 19497 | 20396 | - | 3.A.1.1.10 |
| TC | HRGMv2_4550_28 | HRGMv2_4550_28_16 | 20414 | 21379 | - | 3.A.1.1.10 |
| TC | HRGMv2_4550_28 | HRGMv2_4550_28_17 | 21583 | 23292 | - | 3.A.1.1.10 |
| pfam | HRGMv2_4550_28 | HRGMv2_4550_28_18 | 23929 | 26523 | - | VWA | VWA_2 | GBS104-like_Ig |
| pfam | HRGMv2_4550_28 | HRGMv2_4550_28_19 | 26749 | 28995 | - | Flg_new_2 |
| CAZyme | HRGMv2_4550_28 | HRGMv2_4550_28_20 | 29172 | 31115 | - | GH36 |
Gene ID: HRGMv2_4550_28_15
Type: TC
Location: 19497 - 20396 (-)
Type: TC
Location: 19497 - 20396 (-)
Gene ID: HRGMv2_4550_28_16
Type: TC
Location: 20414 - 21379 (-)
Type: TC
Location: 20414 - 21379 (-)
Gene ID: HRGMv2_4550_28_17
Type: TC
Location: 21583 - 23292 (-)
Type: TC
Location: 21583 - 23292 (-)
Gene ID: HRGMv2_4550_28_18
Type: pfam
Location: 23929 - 26523 (-)
Type: pfam
Location: 23929 - 26523 (-)
Gene ID: HRGMv2_4550_28_19
Type: pfam
Location: 26749 - 28995 (-)
Type: pfam
Location: 26749 - 28995 (-)
Gene ID: HRGMv2_4550_28_20
Type: CAZyme
Location: 29172 - 31115 (-)
Type: CAZyme
Location: 29172 - 31115 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp934869045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.