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Cluster: HRGMv2_4550_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4550_24 HRGMv2_4550_24_32 31852 32847 + GH130_7
STP HRGMv2_4550_24 HRGMv2_4550_24_33 33102 34076 + GGDEF
pfam HRGMv2_4550_24 HRGMv2_4550_24_34 34135 35886 + ILVD_EDD_N | ILV_EDD_C
TC HRGMv2_4550_24 HRGMv2_4550_24_35 36000 38471 - 4.C.1.1.7
NULL(UNKNOWN) HRGMv2_4550_24 HRGMv2_4550_24_36 38419 38889 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4550_24 HRGMv2_4550_24_37 39050 40282 + HTH_AraC
TC HRGMv2_4550_24 HRGMv2_4550_24_38 40269 42083 + 8.A.59.2.1
TC HRGMv2_4550_24 HRGMv2_4550_24_39 42235 43155 + 3.A.1.1.29
TC HRGMv2_4550_24 HRGMv2_4550_24_40 43152 44033 + 3.A.1.1.29
Gene ID: HRGMv2_4550_24_32
Type: CAZyme
Location: 31852 - 32847 (+)
Gene ID: HRGMv2_4550_24_33
Type: STP
Location: 33102 - 34076 (+)
Gene ID: HRGMv2_4550_24_34
Type: pfam
Location: 34135 - 35886 (+)
Gene ID: HRGMv2_4550_24_35
Type: TC
Location: 36000 - 38471 (-)
Gene ID: HRGMv2_4550_24_36
Type:
Location: 38419 - 38889 (-)
Gene ID: HRGMv2_4550_24_37
Type: TF
Location: 39050 - 40282 (+)
Gene ID: HRGMv2_4550_24_38
Type: TC
Location: 40269 - 42083 (+)
Gene ID: HRGMv2_4550_24_39
Type: TC
Location: 42235 - 43155 (+)
Gene ID: HRGMv2_4550_24_40
Type: TC
Location: 43152 - 44033 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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