Cluster: HRGMv2_4550_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4550
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4550_23 | HRGMv2_4550_23_33 | 39425 | 40348 | + | 3.A.1.1.10 |
| TC | HRGMv2_4550_23 | HRGMv2_4550_23_34 | 40363 | 41259 | + | 3.A.1.1.29 |
| TC | HRGMv2_4550_23 | HRGMv2_4550_23_35 | 41325 | 42941 | + | 3.A.1.1.9 |
| pfam | HRGMv2_4550_23 | HRGMv2_4550_23_36 | 43024 | 43998 | - | SH3_4 | SH3_3 | SH3_3 | Peptidase_C39_2 |
| CAZyme | HRGMv2_4550_23 | HRGMv2_4550_23_37 | 44256 | 46112 | - | GH146 |
Gene ID: HRGMv2_4550_23_33
Type: TC
Location: 39425 - 40348 (+)
Type: TC
Location: 39425 - 40348 (+)
Gene ID: HRGMv2_4550_23_34
Type: TC
Location: 40363 - 41259 (+)
Type: TC
Location: 40363 - 41259 (+)
Gene ID: HRGMv2_4550_23_35
Type: TC
Location: 41325 - 42941 (+)
Type: TC
Location: 41325 - 42941 (+)
Gene ID: HRGMv2_4550_23_36
Type: pfam
Location: 43024 - 43998 (-)
Type: pfam
Location: 43024 - 43998 (-)
Gene ID: HRGMv2_4550_23_37
Type: CAZyme
Location: 44256 - 46112 (-)
Type: CAZyme
Location: 44256 - 46112 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp934869045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.