Cluster: HRGMv2_4550_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4550
- CGC Family ID: CGCFAM_10647
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4550_10 | HRGMv2_4550_10_16 | 14451 | 16676 | + | 3.A.7.16.1 |
| CAZyme | HRGMv2_4550_10 | HRGMv2_4550_10_17 | 16756 | 17574 | + | CE4 |
| pfam | HRGMv2_4550_10 | HRGMv2_4550_10_18 | 17670 | 18452 | + | Ubie_methyltran | Methyltransf_11 | Methyltransf_25 | Methyltransf_31 |
| TC | HRGMv2_4550_10 | HRGMv2_4550_10_19 | 18515 | 19879 | + | 9.A.40.2.1 |
| NULL(UNKNOWN) | HRGMv2_4550_10 | HRGMv2_4550_10_20 | 20204 | 21316 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4550_10 | HRGMv2_4550_10_21 | 21698 | 22510 | + | CE4 |
Gene ID: HRGMv2_4550_10_16
Type: TC
Location: 14451 - 16676 (+)
Type: TC
Location: 14451 - 16676 (+)
Gene ID: HRGMv2_4550_10_17
Type: CAZyme
Location: 16756 - 17574 (+)
Type: CAZyme
Location: 16756 - 17574 (+)
Gene ID: HRGMv2_4550_10_18
Type: pfam
Location: 17670 - 18452 (+)
Type: pfam
Location: 17670 - 18452 (+)
Gene ID: HRGMv2_4550_10_19
Type: TC
Location: 18515 - 19879 (+)
Type: TC
Location: 18515 - 19879 (+)
Gene ID: HRGMv2_4550_10_20
Type:
Location: 20204 - 21316 (-)
Type:
Location: 20204 - 21316 (-)
Gene ID: HRGMv2_4550_10_21
Type: CAZyme
Location: 21698 - 22510 (+)
Type: CAZyme
Location: 21698 - 22510 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp934869045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.