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Cluster: HRGMv2_4550_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4550_9 HRGMv2_4550_9_17 19942 21642 + 3.A.1.1.10
TC HRGMv2_4550_9 HRGMv2_4550_9_18 21677 22582 + 3.A.1.1.10
TC HRGMv2_4550_9 HRGMv2_4550_9_19 22595 23500 + 3.A.1.1.10
CAZyme HRGMv2_4550_9 HRGMv2_4550_9_20 23497 24699 + CE9
pfam HRGMv2_4550_9 HRGMv2_4550_9_21 24645 25538 + ROK
NULL(UNKNOWN) HRGMv2_4550_9 HRGMv2_4550_9_22 25535 25888 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4550_9 HRGMv2_4550_9_23 25885 27675 + GH123
pfam HRGMv2_4550_9 HRGMv2_4550_9_24 27672 28340 + DeoC
pfam HRGMv2_4550_9 HRGMv2_4550_9_25 28334 29116 + PNP_UDP_1
TC HRGMv2_4550_9 HRGMv2_4550_9_26 29113 29784 + 2.A.115.2.15
pfam HRGMv2_4550_9 HRGMv2_4550_9_27 29753 30913 + Metalloenzyme
TF HRGMv2_4550_9 HRGMv2_4550_9_28 31055 31516 + 0040517
TC HRGMv2_4550_9 HRGMv2_4550_9_29 31624 32955 + 2.A.66.1.37
TC HRGMv2_4550_9 HRGMv2_4550_9_30 33259 34884 + 3.A.1.121.5
Gene ID: HRGMv2_4550_9_17
Type: TC
Location: 19942 - 21642 (+)
Gene ID: HRGMv2_4550_9_18
Type: TC
Location: 21677 - 22582 (+)
Gene ID: HRGMv2_4550_9_19
Type: TC
Location: 22595 - 23500 (+)
Gene ID: HRGMv2_4550_9_20
Type: CAZyme
Location: 23497 - 24699 (+)
Gene ID: HRGMv2_4550_9_21
Type: pfam
Location: 24645 - 25538 (+)
Gene ID: HRGMv2_4550_9_22
Type:
Location: 25535 - 25888 (+)
Gene ID: HRGMv2_4550_9_23
Type: CAZyme
Location: 25885 - 27675 (+)
Gene ID: HRGMv2_4550_9_24
Type: pfam
Location: 27672 - 28340 (+)
Gene ID: HRGMv2_4550_9_25
Type: pfam
Location: 28334 - 29116 (+)
Gene ID: HRGMv2_4550_9_26
Type: TC
Location: 29113 - 29784 (+)
Gene ID: HRGMv2_4550_9_27
Type: pfam
Location: 29753 - 30913 (+)
Gene ID: HRGMv2_4550_9_28
Type: TF
Location: 31055 - 31516 (+)
Gene ID: HRGMv2_4550_9_29
Type: TC
Location: 31624 - 32955 (+)
Gene ID: HRGMv2_4550_9_30
Type: TC
Location: 33259 - 34884 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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