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Cluster: HRGMv2_4539_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4539_7 HRGMv2_4539_7_4 3341 5608 - 3.A.9.1.2
NULL(UNKNOWN) HRGMv2_4539_7 HRGMv2_4539_7_5 5782 5910 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4539_7 HRGMv2_4539_7_6 6004 7428 - GntR
CAZyme HRGMv2_4539_7 HRGMv2_4539_7_7 7394 10459 - GH59
pfam HRGMv2_4539_7 HRGMv2_4539_7_8 10434 11168 - Methyltransf_4
pfam HRGMv2_4539_7 HRGMv2_4539_7_9 11396 11875 - dCMP_cyt_deam_1 | MafB19-deam
CAZyme HRGMv2_4539_7 HRGMv2_4539_7_10 11887 13704 - GH5_1
Gene ID: HRGMv2_4539_7_4
Type: TC
Location: 3341 - 5608 (-)
Gene ID: HRGMv2_4539_7_5
Type:
Location: 5782 - 5910 (+)
Gene ID: HRGMv2_4539_7_6
Type: TF
Location: 6004 - 7428 (-)
Gene ID: HRGMv2_4539_7_7
Type: CAZyme
Location: 7394 - 10459 (-)
Gene ID: HRGMv2_4539_7_8
Type: pfam
Location: 10434 - 11168 (-)
Gene ID: HRGMv2_4539_7_9
Type: pfam
Location: 11396 - 11875 (-)
Gene ID: HRGMv2_4539_7_10
Type: CAZyme
Location: 11887 - 13704 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4539_7_9 vegan > omnivore 2.14668 0.01232
HRGMv2_4539_7_9 vegetarian > omnivore 1.85102 0.00861

🧭 Explore Read Mapping of CGC

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