Cluster: HRGMv2_4539_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4539
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4539_6 | HRGMv2_4539_6_26 | 35522 | 36352 | + | 3.A.1.132.3 |
| TC | HRGMv2_4539_6 | HRGMv2_4539_6_27 | 36642 | 38363 | + | 1.A.11.2.7 |
| TF | HRGMv2_4539_6 | HRGMv2_4539_6_28 | 38590 | 38904 | + | Trp_repressor |
| CAZyme | HRGMv2_4539_6 | HRGMv2_4539_6_29 | 38901 | 41669 | + | CBM3 | GH9 |
Gene ID: HRGMv2_4539_6_26
Type: TC
Location: 35522 - 36352 (+)
Type: TC
Location: 35522 - 36352 (+)
Gene ID: HRGMv2_4539_6_27
Type: TC
Location: 36642 - 38363 (+)
Type: TC
Location: 36642 - 38363 (+)
Gene ID: HRGMv2_4539_6_28
Type: TF
Location: 38590 - 38904 (+)
Type: TF
Location: 38590 - 38904 (+)
Gene ID: HRGMv2_4539_6_29
Type: CAZyme
Location: 38901 - 41669 (+)
Type: CAZyme
Location: 38901 - 41669 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4539_6_29 | vegan > omnivore | 1.66707 | 0.01232 |
| HRGMv2_4539_6_29 | vegetarian > omnivore | 1.44488 | 0.00861 |