Cluster: HRGMv2_4539_CGC3

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_4539_2	HRGMv2_4539_2_68	80863	82017	-	GT4
CAZyme	HRGMv2_4539_2	HRGMv2_4539_2_69	82010	83161	-	GT4
pfam	HRGMv2_4539_2	HRGMv2_4539_2_70	83307	84341	-	Epimerase \| RmlD_sub_bind \| GDP_Man_Dehyd
pfam	HRGMv2_4539_2	HRGMv2_4539_2_71	84692	85768	-	NTP_transferase \| NTP_transf_3 \| ManC_GMP_beta-helix
TC	HRGMv2_4539_2	HRGMv2_4539_2_72	85765	87279	-	9.B.18.1.3

Gene ID: HRGMv2_4539_2_68
Type: CAZyme
Location: 80863 - 82017 (-)

Gene ID: HRGMv2_4539_2_69
Type: CAZyme
Location: 82010 - 83161 (-)

Gene ID: HRGMv2_4539_2_70
Type: pfam
Location: 83307 - 84341 (-)

Gene ID: HRGMv2_4539_2_71
Type: pfam
Location: 84692 - 85768 (-)

Gene ID: HRGMv2_4539_2_72
Type: TC
Location: 85765 - 87279 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_4539_2_68	vegan > omnivore	2.00124	0.01232
HRGMv2_4539_2_68	vegetarian > omnivore	1.74452	0.00861
HRGMv2_4539_2_70	vegan > omnivore	1.19438	0.01232
HRGMv2_4539_2_70	vegetarian > omnivore	1.04997	0.00861
HRGMv2_4539_2_71	vegan > omnivore	1.37506	0.01232
HRGMv2_4539_2_71	vegetarian > omnivore	1.77809	0.00861
HRGMv2_4539_2_72	vegan > omnivore	1.47055	0.01232
HRGMv2_4539_2_72	vegetarian > omnivore	1.89429	0.00861