Cluster: HRGMv2_4539_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4539
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4539_42 | HRGMv2_4539_42_2 | 1333 | 3684 | - | 9.A.8.1.6 |
| pfam | HRGMv2_4539_42 | HRGMv2_4539_42_3 | 3940 | 5019 | - | ThiI | tRNA_Me_trans | tRNA_Me_trans_C | tRNA_Me_trans_M |
| pfam | HRGMv2_4539_42 | HRGMv2_4539_42_4 | 5231 | 5812 | + | PTAC |
| CAZyme | HRGMv2_4539_42 | HRGMv2_4539_42_5 | 5907 | 8051 | + | CBM79 | CBM79 | GH5_4 |
| TC | HRGMv2_4539_42 | HRGMv2_4539_42_6 | 8208 | 8825 | + | 2.A.115.2.14 |
Gene ID: HRGMv2_4539_42_2
Type: TC
Location: 1333 - 3684 (-)
Type: TC
Location: 1333 - 3684 (-)
Gene ID: HRGMv2_4539_42_3
Type: pfam
Location: 3940 - 5019 (-)
Type: pfam
Location: 3940 - 5019 (-)
Gene ID: HRGMv2_4539_42_4
Type: pfam
Location: 5231 - 5812 (+)
Type: pfam
Location: 5231 - 5812 (+)
Gene ID: HRGMv2_4539_42_5
Type: CAZyme
Location: 5907 - 8051 (+)
Type: CAZyme
Location: 5907 - 8051 (+)
Gene ID: HRGMv2_4539_42_6
Type: TC
Location: 8208 - 8825 (+)
Type: TC
Location: 8208 - 8825 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4539_42_4 | vegan > omnivore | 1.38996 | 0.01232 |
| HRGMv2_4539_42_4 | vegetarian > omnivore | 1.35727 | 0.00861 |