Cluster: HRGMv2_4539_CGC27
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4539
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4539_37 | HRGMv2_4539_37_17 | 19578 | 20933 | + | 2.A.22.5.3 |
| TF | HRGMv2_4539_37 | HRGMv2_4539_37_18 | 21082 | 21549 | + | HTH_3 |
| TC | HRGMv2_4539_37 | HRGMv2_4539_37_19 | 21536 | 22270 | + | 3.A.1.105.12 |
| pfam | HRGMv2_4539_37 | HRGMv2_4539_37_20 | 22267 | 23019 | + | ABC2_membrane | ABC2_membrane_3 |
| CAZyme | HRGMv2_4539_37 | HRGMv2_4539_37_21 | 23084 | 24451 | - | GH1 |
Gene ID: HRGMv2_4539_37_17
Type: TC
Location: 19578 - 20933 (+)
Type: TC
Location: 19578 - 20933 (+)
Gene ID: HRGMv2_4539_37_18
Type: TF
Location: 21082 - 21549 (+)
Type: TF
Location: 21082 - 21549 (+)
Gene ID: HRGMv2_4539_37_19
Type: TC
Location: 21536 - 22270 (+)
Type: TC
Location: 21536 - 22270 (+)
Gene ID: HRGMv2_4539_37_20
Type: pfam
Location: 22267 - 23019 (+)
Type: pfam
Location: 22267 - 23019 (+)
Gene ID: HRGMv2_4539_37_21
Type: CAZyme
Location: 23084 - 24451 (-)
Type: CAZyme
Location: 23084 - 24451 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.