Cluster: HRGMv2_4539_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4539
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4539_27 | HRGMv2_4539_27_23 | 22681 | 24072 | + | 2.A.66.1.33 |
| TC | HRGMv2_4539_27 | HRGMv2_4539_27_24 | 24247 | 24615 | + | 1.E.14.1.1 |
| TC | HRGMv2_4539_27 | HRGMv2_4539_27_25 | 24608 | 25300 | + | 2.A.122.1.1 |
| TF | HRGMv2_4539_27 | HRGMv2_4539_27_26 | 25312 | 26001 | + | GntR |
| CAZyme | HRGMv2_4539_27 | HRGMv2_4539_27_27 | 26144 | 27958 | + | GH5_4 |
Gene ID: HRGMv2_4539_27_23
Type: TC
Location: 22681 - 24072 (+)
Type: TC
Location: 22681 - 24072 (+)
Gene ID: HRGMv2_4539_27_24
Type: TC
Location: 24247 - 24615 (+)
Type: TC
Location: 24247 - 24615 (+)
Gene ID: HRGMv2_4539_27_25
Type: TC
Location: 24608 - 25300 (+)
Type: TC
Location: 24608 - 25300 (+)
Gene ID: HRGMv2_4539_27_26
Type: TF
Location: 25312 - 26001 (+)
Type: TF
Location: 25312 - 26001 (+)
Gene ID: HRGMv2_4539_27_27
Type: CAZyme
Location: 26144 - 27958 (+)
Type: CAZyme
Location: 26144 - 27958 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.