Cluster: HRGMv2_4539_CGC22
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4539
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4539_24 | HRGMv2_4539_24_7 | 6046 | 6909 | + | 3.A.1.149.1 |
| pfam | HRGMv2_4539_24 | HRGMv2_4539_24_8 | 6906 | 7568 | + | ABC2_membrane_5 |
| pfam | HRGMv2_4539_24 | HRGMv2_4539_24_9 | 7704 | 7982 | - | Ammonium_transp |
| TC | HRGMv2_4539_24 | HRGMv2_4539_24_10 | 8275 | 9072 | - | 1.A.11.2.7 |
| STP | HRGMv2_4539_24 | HRGMv2_4539_24_11 | 10158 | 12155 | + | HATPase_c |
| pfam | HRGMv2_4539_24 | HRGMv2_4539_24_12 | 12175 | 14424 | + | DNA_topoisoIV | DNA_gyraseA_C | DNA_gyraseA_C |
| CAZyme | HRGMv2_4539_24 | HRGMv2_4539_24_13 | 14520 | 16997 | - | CBM76 | GH44 |
Gene ID: HRGMv2_4539_24_7
Type: TC
Location: 6046 - 6909 (+)
Type: TC
Location: 6046 - 6909 (+)
Gene ID: HRGMv2_4539_24_8
Type: pfam
Location: 6906 - 7568 (+)
Type: pfam
Location: 6906 - 7568 (+)
Gene ID: HRGMv2_4539_24_9
Type: pfam
Location: 7704 - 7982 (-)
Type: pfam
Location: 7704 - 7982 (-)
Gene ID: HRGMv2_4539_24_10
Type: TC
Location: 8275 - 9072 (-)
Type: TC
Location: 8275 - 9072 (-)
Gene ID: HRGMv2_4539_24_11
Type: STP
Location: 10158 - 12155 (+)
Type: STP
Location: 10158 - 12155 (+)
Gene ID: HRGMv2_4539_24_12
Type: pfam
Location: 12175 - 14424 (+)
Type: pfam
Location: 12175 - 14424 (+)
Gene ID: HRGMv2_4539_24_13
Type: CAZyme
Location: 14520 - 16997 (-)
Type: CAZyme
Location: 14520 - 16997 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.