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Cluster: HRGMv2_4539_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4539_20 HRGMv2_4539_20_19 18259 19599 + 9.A.40.2.2
NULL(UNKNOWN) HRGMv2_4539_20 HRGMv2_4539_20_20 19773 20381 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4539_20 HRGMv2_4539_20_21 20639 23500 - CBM13 | CBM13 | PL1_8
NULL(UNKNOWN) HRGMv2_4539_20 HRGMv2_4539_20_22 23764 23946 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4539_20 HRGMv2_4539_20_23 24156 26291 + 4.A.1.1.9
STP HRGMv2_4539_20 HRGMv2_4539_20_24 26305 26562 + PTS-HPr
TC HRGMv2_4539_20 HRGMv2_4539_20_25 26574 28211 + 8.A.7.1.1
CAZyme HRGMv2_4539_20 HRGMv2_4539_20_26 28364 29533 - GH5_4
CAZyme HRGMv2_4539_20 HRGMv2_4539_20_27 29547 30902 - GH5_4
Gene ID: HRGMv2_4539_20_19
Type: TC
Location: 18259 - 19599 (+)
Gene ID: HRGMv2_4539_20_20
Type:
Location: 19773 - 20381 (+)
Gene ID: HRGMv2_4539_20_21
Type: CAZyme
Location: 20639 - 23500 (-)
Gene ID: HRGMv2_4539_20_22
Type:
Location: 23764 - 23946 (-)
Gene ID: HRGMv2_4539_20_23
Type: TC
Location: 24156 - 26291 (+)
Gene ID: HRGMv2_4539_20_24
Type: STP
Location: 26305 - 26562 (+)
Gene ID: HRGMv2_4539_20_25
Type: TC
Location: 26574 - 28211 (+)
Gene ID: HRGMv2_4539_20_26
Type: CAZyme
Location: 28364 - 29533 (-)
Gene ID: HRGMv2_4539_20_27
Type: CAZyme
Location: 29547 - 30902 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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