Cluster: HRGMv2_4539_CGC14
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4539
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4539_11 | HRGMv2_4539_11_14 | 11367 | 13511 | - | GH9 |
| pfam | HRGMv2_4539_11 | HRGMv2_4539_11_15 | 13699 | 13995 | - | DUF2325 |
| TC | HRGMv2_4539_11 | HRGMv2_4539_11_16 | 14392 | 15981 | + | 2.A.21.2.2 |
Gene ID: HRGMv2_4539_11_14
Type: CAZyme
Location: 11367 - 13511 (-)
Type: CAZyme
Location: 11367 - 13511 (-)
Gene ID: HRGMv2_4539_11_15
Type: pfam
Location: 13699 - 13995 (-)
Type: pfam
Location: 13699 - 13995 (-)
Gene ID: HRGMv2_4539_11_16
Type: TC
Location: 14392 - 15981 (+)
Type: TC
Location: 14392 - 15981 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4539_11_16 | vegetarian > omnivore | 1.27670 | 0.00861 |