Cluster: HRGMv2_4536_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_00678
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4536_34 | HRGMv2_4536_34_31 | 33768 | 35864 | - | GH25 |
| TC | HRGMv2_4536_34 | HRGMv2_4536_34_32 | 36480 | 37046 | + | 2.A.88.3.3 |
| TC | HRGMv2_4536_34 | HRGMv2_4536_34_33 | 37398 | 38873 | + | 4.A.1.1.7 |
| sulfatase | HRGMv2_4536_34 | HRGMv2_4536_34_34 | 39063 | 39791 | + | S1_9 |
| CAZyme | HRGMv2_4536_34 | HRGMv2_4536_34_35 | 39811 | 40938 | + | CE9 |
Gene ID: HRGMv2_4536_34_31
Type: CAZyme
Location: 33768 - 35864 (-)
Type: CAZyme
Location: 33768 - 35864 (-)
Gene ID: HRGMv2_4536_34_32
Type: TC
Location: 36480 - 37046 (+)
Type: TC
Location: 36480 - 37046 (+)
Gene ID: HRGMv2_4536_34_33
Type: TC
Location: 37398 - 38873 (+)
Type: TC
Location: 37398 - 38873 (+)
Gene ID: HRGMv2_4536_34_34
Type: sulfatase
Location: 39063 - 39791 (+)
Type: sulfatase
Location: 39063 - 39791 (+)
Gene ID: HRGMv2_4536_34_35
Type: CAZyme
Location: 39811 - 40938 (+)
Type: CAZyme
Location: 39811 - 40938 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.