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Cluster: HRGMv2_4536_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4536_31 HRGMv2_4536_31_1 76 858 - 3.A.1.3.10
TC HRGMv2_4536_31 HRGMv2_4536_31_2 872 1531 - 3.A.1.3.14
TC HRGMv2_4536_31 HRGMv2_4536_31_3 1531 2388 - 3.A.1.3.3
TC HRGMv2_4536_31 HRGMv2_4536_31_4 2563 3309 - 3.A.1.3.25
TC HRGMv2_4536_31 HRGMv2_4536_31_5 3296 3970 - 3.A.1.3.25
TC HRGMv2_4536_31 HRGMv2_4536_31_6 4056 4871 - 3.A.1.3.25
TC HRGMv2_4536_31 HRGMv2_4536_31_7 5087 5677 - 2.A.115.2.14
pfam HRGMv2_4536_31 HRGMv2_4536_31_8 5718 6275 - YcxB
TF HRGMv2_4536_31 HRGMv2_4536_31_9 6372 7094 - GntR
TC HRGMv2_4536_31 HRGMv2_4536_31_10 7306 8721 + 4.A.1.2.13
CAZyme HRGMv2_4536_31 HRGMv2_4536_31_11 8743 10368 + GH13_29
Gene ID: HRGMv2_4536_31_1
Type: TC
Location: 76 - 858 (-)
Gene ID: HRGMv2_4536_31_2
Type: TC
Location: 872 - 1531 (-)
Gene ID: HRGMv2_4536_31_3
Type: TC
Location: 1531 - 2388 (-)
Gene ID: HRGMv2_4536_31_4
Type: TC
Location: 2563 - 3309 (-)
Gene ID: HRGMv2_4536_31_5
Type: TC
Location: 3296 - 3970 (-)
Gene ID: HRGMv2_4536_31_6
Type: TC
Location: 4056 - 4871 (-)
Gene ID: HRGMv2_4536_31_7
Type: TC
Location: 5087 - 5677 (-)
Gene ID: HRGMv2_4536_31_8
Type: pfam
Location: 5718 - 6275 (-)
Gene ID: HRGMv2_4536_31_9
Type: TF
Location: 6372 - 7094 (-)
Gene ID: HRGMv2_4536_31_10
Type: TC
Location: 7306 - 8721 (+)
Gene ID: HRGMv2_4536_31_11
Type: CAZyme
Location: 8743 - 10368 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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