Cluster: HRGMv2_4536_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_01316
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4536_30 | HRGMv2_4536_30_3 | 2771 | 4660 | + | 3.A.1.121.4 |
| CAZyme | HRGMv2_4536_30 | HRGMv2_4536_30_4 | 4843 | 5556 | + | GT111 |
| CAZyme | HRGMv2_4536_30 | HRGMv2_4536_30_5 | 5546 | 6442 | + | GT2 |
| pfam | HRGMv2_4536_30 | HRGMv2_4536_30_6 | 6439 | 8172 | + | Hydrolase |
| CAZyme | HRGMv2_4536_30 | HRGMv2_4536_30_7 | 8194 | 9207 | + | GT2 |
Gene ID: HRGMv2_4536_30_3
Type: TC
Location: 2771 - 4660 (+)
Type: TC
Location: 2771 - 4660 (+)
Gene ID: HRGMv2_4536_30_4
Type: CAZyme
Location: 4843 - 5556 (+)
Type: CAZyme
Location: 4843 - 5556 (+)
Gene ID: HRGMv2_4536_30_5
Type: CAZyme
Location: 5546 - 6442 (+)
Type: CAZyme
Location: 5546 - 6442 (+)
Gene ID: HRGMv2_4536_30_6
Type: pfam
Location: 6439 - 8172 (+)
Type: pfam
Location: 6439 - 8172 (+)
Gene ID: HRGMv2_4536_30_7
Type: CAZyme
Location: 8194 - 9207 (+)
Type: CAZyme
Location: 8194 - 9207 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.