Cluster: HRGMv2_4536_CGC56
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4536
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4536_92 | HRGMv2_4536_92_2 | 1432 | 3108 | - | GH13_29 |
| STP | HRGMv2_4536_92 | HRGMv2_4536_92_3 | 3203 | 4477 | - | SBP_bac_1 |
| TC | HRGMv2_4536_92 | HRGMv2_4536_92_4 | 4534 | 5355 | - | 3.A.1.1.15 |
| TC | HRGMv2_4536_92 | HRGMv2_4536_92_5 | 5348 | 6217 | - | 3.A.1.1.15 |
| TF | HRGMv2_4536_92 | HRGMv2_4536_92_6 | 6572 | 7564 | - | 0035607 |
| TC | HRGMv2_4536_92 | HRGMv2_4536_92_7 | 7825 | 9207 | + | 4.A.1.2.11 |
| CAZyme | HRGMv2_4536_92 | HRGMv2_4536_92_8 | 9238 | 10701 | + | GH1 |
Gene ID: HRGMv2_4536_92_2
Type: CAZyme
Location: 1432 - 3108 (-)
Type: CAZyme
Location: 1432 - 3108 (-)
Gene ID: HRGMv2_4536_92_3
Type: STP
Location: 3203 - 4477 (-)
Type: STP
Location: 3203 - 4477 (-)
Gene ID: HRGMv2_4536_92_4
Type: TC
Location: 4534 - 5355 (-)
Type: TC
Location: 4534 - 5355 (-)
Gene ID: HRGMv2_4536_92_5
Type: TC
Location: 5348 - 6217 (-)
Type: TC
Location: 5348 - 6217 (-)
Gene ID: HRGMv2_4536_92_6
Type: TF
Location: 6572 - 7564 (-)
Type: TF
Location: 6572 - 7564 (-)
Gene ID: HRGMv2_4536_92_7
Type: TC
Location: 7825 - 9207 (+)
Type: TC
Location: 7825 - 9207 (+)
Gene ID: HRGMv2_4536_92_8
Type: CAZyme
Location: 9238 - 10701 (+)
Type: CAZyme
Location: 9238 - 10701 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.