Cluster: HRGMv2_4536_CGC54
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_04020
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4536_91 | HRGMv2_4536_91_9 | 8503 | 10656 | - | GH3 |
| CAZyme | HRGMv2_4536_91 | HRGMv2_4536_91_10 | 10691 | 12376 | - | CE17 |
| CAZyme | HRGMv2_4536_91 | HRGMv2_4536_91_11 | 12910 | 14076 | + | GH8 |
| CAZyme | HRGMv2_4536_91 | HRGMv2_4536_91_12 | 14174 | 15670 | + | GH51_1 |
| TC | HRGMv2_4536_91 | HRGMv2_4536_91_13 | 15744 | 16436 | - | 9.B.28.1.3 |
| TC | HRGMv2_4536_91 | HRGMv2_4536_91_14 | 16617 | 18383 | + | 9.B.33.1.1 |
| TF | HRGMv2_4536_91 | HRGMv2_4536_91_15 | 18385 | 19992 | + | HTH_AraC |
| TC | HRGMv2_4536_91 | HRGMv2_4536_91_16 | 20293 | 21960 | + | 3.A.1.1.29 |
| TC | HRGMv2_4536_91 | HRGMv2_4536_91_17 | 22126 | 23049 | + | 3.A.1.1.29 |
| TC | HRGMv2_4536_91 | HRGMv2_4536_91_18 | 23063 | 23950 | + | 3.A.1.1.29 |
| CAZyme | HRGMv2_4536_91 | HRGMv2_4536_91_19 | 24125 | 25687 | + | CBM91 | GH43_12 |
| pfam | HRGMv2_4536_91 | HRGMv2_4536_91_20 | 25924 | 26271 | - | adh_short | Epimerase | KR | adh_short_C2 |
| pfam | HRGMv2_4536_91 | HRGMv2_4536_91_21 | 26307 | 27158 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_4536_91 | HRGMv2_4536_91_22 | 27162 | 28976 | - | CBM32 | GH43_28 |
| CAZyme | HRGMv2_4536_91 | HRGMv2_4536_91_23 | 28982 | 31165 | - | GH2 |
| TC | HRGMv2_4536_91 | HRGMv2_4536_91_24 | 31236 | 32723 | - | 2.A.2.3.5 |
| CAZyme | HRGMv2_4536_91 | HRGMv2_4536_91_25 | 32963 | 34264 | + | GH1 |
Gene ID: HRGMv2_4536_91_9
Type: CAZyme
Location: 8503 - 10656 (-)
Type: CAZyme
Location: 8503 - 10656 (-)
Gene ID: HRGMv2_4536_91_10
Type: CAZyme
Location: 10691 - 12376 (-)
Type: CAZyme
Location: 10691 - 12376 (-)
Gene ID: HRGMv2_4536_91_11
Type: CAZyme
Location: 12910 - 14076 (+)
Type: CAZyme
Location: 12910 - 14076 (+)
Gene ID: HRGMv2_4536_91_12
Type: CAZyme
Location: 14174 - 15670 (+)
Type: CAZyme
Location: 14174 - 15670 (+)
Gene ID: HRGMv2_4536_91_13
Type: TC
Location: 15744 - 16436 (-)
Type: TC
Location: 15744 - 16436 (-)
Gene ID: HRGMv2_4536_91_14
Type: TC
Location: 16617 - 18383 (+)
Type: TC
Location: 16617 - 18383 (+)
Gene ID: HRGMv2_4536_91_15
Type: TF
Location: 18385 - 19992 (+)
Type: TF
Location: 18385 - 19992 (+)
Gene ID: HRGMv2_4536_91_16
Type: TC
Location: 20293 - 21960 (+)
Type: TC
Location: 20293 - 21960 (+)
Gene ID: HRGMv2_4536_91_17
Type: TC
Location: 22126 - 23049 (+)
Type: TC
Location: 22126 - 23049 (+)
Gene ID: HRGMv2_4536_91_18
Type: TC
Location: 23063 - 23950 (+)
Type: TC
Location: 23063 - 23950 (+)
Gene ID: HRGMv2_4536_91_19
Type: CAZyme
Location: 24125 - 25687 (+)
Type: CAZyme
Location: 24125 - 25687 (+)
Gene ID: HRGMv2_4536_91_20
Type: pfam
Location: 25924 - 26271 (-)
Type: pfam
Location: 25924 - 26271 (-)
Gene ID: HRGMv2_4536_91_21
Type: pfam
Location: 26307 - 27158 (-)
Type: pfam
Location: 26307 - 27158 (-)
Gene ID: HRGMv2_4536_91_22
Type: CAZyme
Location: 27162 - 28976 (-)
Type: CAZyme
Location: 27162 - 28976 (-)
Gene ID: HRGMv2_4536_91_23
Type: CAZyme
Location: 28982 - 31165 (-)
Type: CAZyme
Location: 28982 - 31165 (-)
Gene ID: HRGMv2_4536_91_24
Type: TC
Location: 31236 - 32723 (-)
Type: TC
Location: 31236 - 32723 (-)
Gene ID: HRGMv2_4536_91_25
Type: CAZyme
Location: 32963 - 34264 (+)
Type: CAZyme
Location: 32963 - 34264 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.