Cluster: HRGMv2_4536_CGC53
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_07215
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4536_90 | HRGMv2_4536_90_77 | 100367 | 100960 | - | 4.A.1.2.11 |
| pfam | HRGMv2_4536_90 | HRGMv2_4536_90_78 | 101128 | 101985 | - | PRD | PRD | CAT_RBD |
| TF | HRGMv2_4536_90 | HRGMv2_4536_90_79 | 102300 | 103064 | - | HTH_6 |
| TC | HRGMv2_4536_90 | HRGMv2_4536_90_80 | 103306 | 104898 | + | 4.A.1.1.16 |
| CAZyme | HRGMv2_4536_90 | HRGMv2_4536_90_81 | 104953 | 106281 | + | GH4 |
Gene ID: HRGMv2_4536_90_77
Type: TC
Location: 100367 - 100960 (-)
Type: TC
Location: 100367 - 100960 (-)
Gene ID: HRGMv2_4536_90_78
Type: pfam
Location: 101128 - 101985 (-)
Type: pfam
Location: 101128 - 101985 (-)
Gene ID: HRGMv2_4536_90_79
Type: TF
Location: 102300 - 103064 (-)
Type: TF
Location: 102300 - 103064 (-)
Gene ID: HRGMv2_4536_90_80
Type: TC
Location: 103306 - 104898 (+)
Type: TC
Location: 103306 - 104898 (+)
Gene ID: HRGMv2_4536_90_81
Type: CAZyme
Location: 104953 - 106281 (+)
Type: CAZyme
Location: 104953 - 106281 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.