Cluster: HRGMv2_4536_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_02103
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4536_23 | HRGMv2_4536_23_1 | 1 | 861 | - | 3.A.1.26.1 |
| NULL(UNKNOWN) | HRGMv2_4536_23 | HRGMv2_4536_23_2 | 868 | 1698 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4536_23 | HRGMv2_4536_23_3 | 1893 | 3236 | - | 2.A.66.1.32 |
| TF | HRGMv2_4536_23 | HRGMv2_4536_23_4 | 3345 | 3992 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4536_23 | HRGMv2_4536_23_5 | 4024 | 5667 | + | GH120 |
Gene ID: HRGMv2_4536_23_1
Type: TC
Location: 1 - 861 (-)
Type: TC
Location: 1 - 861 (-)
Gene ID: HRGMv2_4536_23_2
Type:
Location: 868 - 1698 (-)
Type:
Location: 868 - 1698 (-)
Gene ID: HRGMv2_4536_23_3
Type: TC
Location: 1893 - 3236 (-)
Type: TC
Location: 1893 - 3236 (-)
Gene ID: HRGMv2_4536_23_4
Type: TF
Location: 3345 - 3992 (-)
Type: TF
Location: 3345 - 3992 (-)
Gene ID: HRGMv2_4536_23_5
Type: CAZyme
Location: 4024 - 5667 (+)
Type: CAZyme
Location: 4024 - 5667 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.