Cluster: HRGMv2_4536_CGC49
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4536
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4536_85 | HRGMv2_4536_85_5 | 3574 | 5142 | - | GH13_44 |
| TC | HRGMv2_4536_85 | HRGMv2_4536_85_6 | 5386 | 7113 | + | 2.A.114.1.3 |
| TC | HRGMv2_4536_85 | HRGMv2_4536_85_7 | 7308 | 8168 | + | 3.A.1.3.20 |
| TC | HRGMv2_4536_85 | HRGMv2_4536_85_8 | 8261 | 9085 | + | 3.A.1.3.20 |
| TC | HRGMv2_4536_85 | HRGMv2_4536_85_9 | 9078 | 9818 | + | 3.A.1.3.20 |
Gene ID: HRGMv2_4536_85_5
Type: CAZyme
Location: 3574 - 5142 (-)
Type: CAZyme
Location: 3574 - 5142 (-)
Gene ID: HRGMv2_4536_85_6
Type: TC
Location: 5386 - 7113 (+)
Type: TC
Location: 5386 - 7113 (+)
Gene ID: HRGMv2_4536_85_7
Type: TC
Location: 7308 - 8168 (+)
Type: TC
Location: 7308 - 8168 (+)
Gene ID: HRGMv2_4536_85_8
Type: TC
Location: 8261 - 9085 (+)
Type: TC
Location: 8261 - 9085 (+)
Gene ID: HRGMv2_4536_85_9
Type: TC
Location: 9078 - 9818 (+)
Type: TC
Location: 9078 - 9818 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4536_85_7 | vegetarian > omnivore | 1.04909 | 0.01878 |